NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076924_1055125

Scaffold Ga0076924_1055125


Overview

Basic Information
Taxon OID3300005747 Open in IMG/M
Scaffold IDGa0076924_1055125 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - control T14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11775
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041743Metagenome159Y
F105298Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0076924_105512511F041743GGAGMSYQTIIDNATYVTIDTRKVTAQSISRSGQYKTSERSPAPFMITVGMHDGLKYSENRSVIQDIYTVGRTTESNISLNNNSGMNYLTNYQGDIETAQLNNITLNSVFGNEIYVDCSGATGSGNLFEKGDYIQPKGNTDTYRYPYIVTSDVAFSTGSNITIPVHRPVLSQTGVALTSGGIKVGNDVRFHLKCMDLPSYSVVPYDLVGFSGEFGFIEVIT*
Ga0076924_105512517F105298AGGAGGMSGRVLDFKSYIGGADNVIVEEMFKSTQKAYTYNYGFDITDYTFEADYQTIVVDTVTYDRVTGDPNFTESTVVGYFANAEISSSHINNTSAASGLVTFTIPSNRYTGNVIPDARSNVAITVVRFGWTDTGATPNITDSHRYAIIERFEPDSTIGNPRESAGFTSIT*
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