NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0076924_1128578

Scaffold Ga0076924_1128578


Overview

Basic Information
Taxon OID3300005747 Open in IMG/M
Scaffold IDGa0076924_1128578 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - control T14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16820
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (23.81%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005218Metagenome / Metatranscriptome408Y
F011860Metagenome / Metatranscriptome286Y
F015999Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0076924_11285784F005218N/AMARKLTENNDRFYGYTRKPNKTKGNITGIDLEFESVNPYEFKKGMYTELEKMGTTLRESESDQREKATETVLKNLKDVPAYYSYMEHYETVTRNMDRKPSFKTFLKELEGHSMKEMGEKFTEDKMKEIKLKESIREEVRAKINELFKTK*
Ga0076924_11285787F015999N/AMSLNSFFDSIDTDAQFDAWKSRIKQKLIHLKNSIPIENRDELNYIGETLEFLDSMNVLSSDFLAHHPNMDNKETLKNRLEICNSFYRKFGD*
Ga0076924_11285788F011860N/AMARYQQQLNVAMERLDQGLARVHSFVKRGKNAEAIHYMENDLKELYSELQNIINIEPRQVDNKIGHL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.