Basic Information | |
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Taxon OID | 3300005747 Open in IMG/M |
Scaffold ID | Ga0076924_1128578 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Vineyard Sound, MA, USA - control T14 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Wisconsin, Madison |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16820 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (23.81%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil |
Source Dataset Sampling Location | ||||||||
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Location Name | USA | |||||||
Coordinates | Lat. (o) | 41.4417 | Long. (o) | -70.7744 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F005218 | Metagenome / Metatranscriptome | 408 | Y |
F011860 | Metagenome / Metatranscriptome | 286 | Y |
F015999 | Metagenome / Metatranscriptome | 250 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0076924_11285784 | F005218 | N/A | MARKLTENNDRFYGYTRKPNKTKGNITGIDLEFESVNPYEFKKGMYTELEKMGTTLRESESDQREKATETVLKNLKDVPAYYSYMEHYETVTRNMDRKPSFKTFLKELEGHSMKEMGEKFTEDKMKEIKLKESIREEVRAKINELFKTK* |
Ga0076924_11285787 | F015999 | N/A | MSLNSFFDSIDTDAQFDAWKSRIKQKLIHLKNSIPIENRDELNYIGETLEFLDSMNVLSSDFLAHHPNMDNKETLKNRLEICNSFYRKFGD* |
Ga0076924_11285788 | F011860 | N/A | MARYQQQLNVAMERLDQGLARVHSFVKRGKNAEAIHYMENDLKELYSELQNIINIEPRQVDNKIGHL* |
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