Basic Information | |
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Taxon OID | 3300005758 Open in IMG/M |
Scaffold ID | Ga0078117_1000146 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 129429 |
Total Scaffold Genes | 166 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 110 (66.27%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001561 | Metagenome / Metatranscriptome | 670 | Y |
F002406 | Metagenome | 562 | Y |
F019834 | Metagenome | 227 | N |
F076092 | Metagenome | 118 | N |
F076096 | Metagenome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0078117_1000146105 | F001561 | GGAG | VQTRKLEYLKKTIETLWHGTDTKTGDYPKIINLYKEVLKIDYKDRDAWENMIWLMWSMSINSKDSSWLNDAEIFTKRYLSLMPNGYRSYEFTGMFYRSMKKDEQLSIRYYESAIRFKDCPATTFHSLVSLCIKNGDRLNALGYTKMGLKRFKNDPYLSSKLLTLK* |
Ga0078117_1000146130 | F019834 | GAGG | MKELKFTITGSIFVPDDTEYEYNFENQIYSFKVKDKTYVLIAGLEADEKEIIVSDEDFKSHGIGFFEYEDAYFED* |
Ga0078117_1000146131 | F002406 | N/A | MEHTDLKWISAMSERLRDELPKEYDDETKELIIRAFRIGLSQDSFILQELKSSSLIESDYFEDEE* |
Ga0078117_100014683 | F076092 | GAG | VELILFLMLIDPKIEYKERCIGCHEPAAILFKNPKTKDLRKTIYDMYRRDSPEIPSKAQVDSMLKYAKSLKKN* |
Ga0078117_100014696 | F076096 | N/A | MTQAEIISLFPDIIHDTISHHTKGLGEMVFYNKEWENPLYWFDKLLKYSNHAELRSYERDLPLIDFLPIDSKFLYSTRKIDVYSMTFETTIKGKRVEIAINSLGAVMTVYPIINTIADKFQFKYKRYLGAFKQPDDYIPPIITEYDLNDVDMEYL* |
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