Basic Information | |
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Taxon OID | 3300005758 Open in IMG/M |
Scaffold ID | Ga0078117_1000951 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3635 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F037190 | Metagenome / Metatranscriptome | 168 | Y |
F084246 | Metagenome | 112 | Y |
F103128 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0078117_100095111 | F037190 | AGGA | MDRYLVIDLTSEGLAFETAHFDFYATWLGIGIAIVSVVAYKIYRTRKGK* |
Ga0078117_10009514 | F103128 | AGGA | MNKLYIDQITRYMNSAKIEFQNYYDDMAMATGALRWMVARLENELGNCHGVENNKCYFYWKHEDCNRLMALLADLTGDDKYLPKPMRGNSWD* |
Ga0078117_10009519 | F084246 | N/A | MDKIEDTNCFSYKVEMIIQVLAENEETARMQLDDKGGYVTTRRVKLMDSVPVYNGVKK* |
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