NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_100022127

Scaffold Ga0066903_100022127


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_100022127 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6831
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021740Metagenome / Metatranscriptome217Y
F028137Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_10002212710F028137GAGVGGTTIRCGWICQLGSLTHRRIQLSLTSMKKGYQGDELWSAVNPNTGKRELVDPEGELIPGETIVKQYYCKRLDGYVTIPGASLFKVTADYTLVSV
Ga0066903_1000221278F021740AGGMAGIPGKGGLKGRSGPPGNQNAFRHGLAAIEKRQDAGLLLPPDESVRQQILDGLISDKGGDGQISTATRILAEVIASDAAWLMVFNGAIDHIIQNNPKARQNPRGLSQLDSYKRGLVNSLTGNLQKFGLDRVAKVETLEEIFSEADDTSENSTQDCPETMNQPEQKS*
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