NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_101039594

Scaffold Ga0066903_101039594


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_101039594 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1502
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000415Metagenome / Metatranscriptome1168Y
F062543Metagenome / Metatranscriptome130Y
F096947Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1010395941F096947GAGGMNGPKSSIRYLGYRTLPDGGREFDFSFEIGNAQAAIVTIDAPITFFRGPDQIAIQEAAGICYETLRFRLQASEASPPGRFDLTPADVAQHRRSGKHRAGRR*
Ga0066903_1010395942F000415GGAGGLDERISAEFSAALLAFNGEAVVYCRGISDVVAQEYAMEYARMLQSRAKGIDAPLPRIPPGLFEPNRNLIRSTLDEMWVKHFPNK*
Ga0066903_1010395943F062543N/AMRWYLGVRCKKCRLPILFALDRTEGAEKREPLSAGKLVLTCPLDNCRHQADYTGAAVSRFQKQPVKPNETGEDNESTKGRKHSNEP*
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