NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_101191805

Scaffold Ga0066903_101191805


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_101191805 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1413
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F002853Metagenome / Metatranscriptome526Y
F015771Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1011918051F002853GGAGGMGRGAQAQTRQLTDQQLGDVNSLNQQFLNQQQQLGNLLVPQFQNILNNPGLSAADKAAVTNQSQGALASAFDSLQQAAQNRLARTKNSAGFGELTDELARQKGIAQGNQAQQNELAFNNTAFQRQMAALQGLSGLFGVDTNLLSRSLGIPAELLNVRANASRGGNGFFSALGSTLGN
Ga0066903_1011918052F000703N/AVLQNQNRMPIREYQSSDLDSLRAIHVAQGFDYALPDWRNPLFVTKLVLTDDSGEVNAAPGFSQASPFAVFEPERNSRVLGAVLLRLTAEAYLLLDPKAGTPRKRWQALLTLHEAARQDAWQRGLEDVHAWLPPRITKKFGKRIERLGWVRDDVWSPYCKKLAG*
Ga0066903_1011918053F015771N/APGLFYFVESDTTPAFGAPRVYFMSASRNLYLQLGNQTLYWRAYSQYIGSLPSAPVTFGSPPTAVSGGGASGPAPLPSSGSGVFPNGVLRSGNGFGIQPGARVVRQTIL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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