Scaffold Ga0078430_164929

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0078430_164929

Scaffold Ga0078430_164929

Overview

Basic Information
Taxon OID	3300005783 Open in IMG/M
Scaffold ID	Ga0078430_164929 Open in IMG/M
Source Dataset Name	Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Center for Biotechnology (CeBiTec), Bielefeld Univeristy
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	510
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → Collimonas fungivorans	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	77.950787	Long. (^o)	-1.627126	Alt. (m)		Depth (m)	5500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062779	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078430_1649291	F062779	N/A	MPLITDSEMDDFDAVILKAGFDVDDFRVIDLEKELHPLTGTVTVHRISTDHAITYRAGHGSTWVADFLVDFYSGEYGRP*

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