NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078432_100239

Scaffold Ga0078432_100239


Overview

Basic Information
Taxon OID3300005785 Open in IMG/M
Scaffold IDGa0078432_100239 Open in IMG/M
Source Dataset NameDeep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten VI
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCenter for Biotechnology (CeBiTec), Bielefeld Univeristy
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3420
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)77.978277Long. (o)0.163645Alt. (m)Depth (m)3500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105217Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0078432_1002393F105217N/AMESGMNTNKERNLLIDSIQYRIFYSEINLDKIPTSISLDVFPNDKISTEIVIDGFLFYANGSLDLVFAEINKKLSLGLAPNQINPSDIIHALEEKNTNEAMAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYESRNQVKYQHFWNRASSRLWEIRNQQKLESYDSLLKNAGTIGKDKPRNYLRVKLVDDDHPAIFWDSAHYENPKRYFTNILYLVKQFIDKILEILKPLYPLDSNLVSK*
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