Scaffold Ga0078432_102445

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0078432_102445

Scaffold Ga0078432_102445

Overview

Basic Information
Taxon OID	3300005785 Open in IMG/M
Scaffold ID	Ga0078432_102445 Open in IMG/M
Source Dataset Name	Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten VI
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Center for Biotechnology (CeBiTec), Bielefeld Univeristy
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1548
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	77.978277	Long. (^o)	0.163645	Alt. (m)		Depth (m)	3500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013764	Metagenome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078432_1024453	F013764	AGGGGG	MSMSTPSFFFFRNSKKNKSTSGLPPYSKRALIAVTVAIPMAFGLNIPLNTFGAFMPVWGIIMINAIVIPSYMTFIIPRASKLFATWLNPTITKGVN*

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