NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1000721

Scaffold Ga0079957_1000721


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1000721 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30140
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (80.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002764Metagenome531Y
F043291Metagenome156N
F066598Metagenome / Metatranscriptome126Y
F083939Metagenome / Metatranscriptome112N
F095171Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100072128F066598GGAMGFLVALIAMVIVFALMLPLIGSIYYDTLATQKESKAQIERMERLRQQLEQDRKDLDRMKNESK*
Ga0079957_100072138F002764GAGGLSPEDEAFEELSRRQGDWGLQGSRKHQIIRYAETNARNEVIEEVAQHIEKCSLAFGKDTIQSFTVYIRGLKTK*
Ga0079957_100072143F083939GGAGMDANYIINSVKQTSETLYREHDADQTERLLYRIQMLEGHIRVLVNHIDNARDEIKTLQTELISKDSK*
Ga0079957_100072144F095171GAGGMLNRTKFPRTFNEAFPNSMENGACIEIHVARLTLADKVVRVVSLIALIVIALDCFIWRP*
Ga0079957_100072145F043291AGGAMKNLAYTTEVHSIDYGYLTVEFDYFEADDSVGLSEVYDWFAYTTEDFEDEPAGTEVTYELTAADQALIFSQIKKHHIAMIEDFHA*
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