NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1001150

Scaffold Ga0079957_1001150


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1001150 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24386
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (56.90%)
Novel Protein Genes25 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (52.00%)
Associated Families25

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F004583Metagenome / Metatranscriptome432Y
F006220Metagenome378Y
F007310Metagenome353Y
F007752Metagenome345Y
F008494Metagenome / Metatranscriptome332N
F009750Metagenome313Y
F010398Metagenome304Y
F011390Metagenome291Y
F011760Metagenome287Y
F013084Metagenome274Y
F015472Metagenome254Y
F018927Metagenome232Y
F023349Metagenome210N
F024557Metagenome205Y
F025741Metagenome200N
F027516Metagenome194Y
F033432Metagenome177Y
F033793Metagenome / Metatranscriptome176N
F033803Metagenome176N
F039133Metagenome164N
F039633Metagenome163N
F057375Metagenome136N
F071239Metagenome / Metatranscriptome122N
F076096Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100115014F071239AGGLKKIHLSNFRKKFDDKSYQIVREAIGKNAFLASEVNIQKIVDNISDPVVKKNFSHWSDGYDFAILN*
Ga0079957_100115016F033803N/AMTINLRKNIARFIYIIDQTTNVDSRAKILKELDLTENELQELVSNLLQFTNSGDKEWYLCNPEYHGFIETFKIISEKTDTEILI*
Ga0079957_100115018F024557N/AMNSQVWIYFSKTGTGYELSGSDIISGFDAFLSKDGTYLIEYSYSDLMNDMHFFIYEWDNSQKKRRTVFEAYQKEIVLMGMVKNIDKMPINVQQKILSMYVNDAEELELEANANS*
Ga0079957_100115019F001561GGAGMQTREQKLKLLNKTIETLWHGVSDTKEGDYPKIINLYKEVLKLDAKNNDAWENLVWLMWSMAVNKKDTVWLFEAEKFVKRYLSLNPNGYRAYEYVGEFYRIMYVDLRLATRYYESAIRWKDAPKSTHHSLISVCEKSGDKLRAIGYCKMTLARFPNDPYTKSRLEALTKR*
Ga0079957_100115020F009750N/AMMLMNAILQPSKIMKEIVTAIYQNGKFKDNKILKPHLTDRVGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTVNIPRNLGDDLWLKFKTEHEGNYSYESF*
Ga0079957_100115021F008494N/ALSNIFILLASHIQDDIMSHQSKEFEMTKTEVINMFMKAVGQYTSAIDKTAETNIQYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIVAKREAEYQLEVARANEARIKAEVDQIKYIIRALEVKEEA*
Ga0079957_100115024F010398AGGAGMQVTIEGVMKVNYQLTVDEDVFNDACEECGLNPKDYKKFTKDQWEELNPHLVQVVFDNGTDVDETEIHEQGTIFADTVTIDDPDHMTTVYYNQDRTFDSVEIM*
Ga0079957_100115026F011760N/AMENTTKQRMVMRVRIQDVSNKSSCIEFVGQGTWFDGKSFIVAQYKSNPHNVYFFVYDSFVPASNWFDEMNAGIGNEIWQLNPDNGNYSGKTYLYSKMTDKLYDPYAISPVQSSPAFLFEIR*
Ga0079957_100115028F018927N/AMNTHIVISRHLAVDGTTTYYVIEKSKNSSSIIWNGTNKQAAYQVAYRNARKENLPLYDTQYRPEVDKNGVKHIIPIGNELLEVNN*
Ga0079957_100115030F013084N/AMGILSIIGLMEETKNAVLARGHNVKNWLVLGNDCYALECIDCKKTVMIKENPLPNEIKVGGEAVAVNCVKPEKKLKKK*
Ga0079957_100115031F007310N/AMRRVLWNGTERWYNHHHYSCLLEDVTAISVNENLCAETVKYMAKRLKDTPYHRTFRYKYSIYQDEYKALVEKFNSEASNNGRLVVE*
Ga0079957_100115033F006220AGGMKKFKKFIEELAIASGTEMMRASQMRPTTYKDKSKYNRKVKHKNRQDKNSGDSFFQSL*
Ga0079957_100115034F076096AGGMVWYDKEWEKPLYWFDKLLTYSPHATERTIERDLPFIDFLPPDAKYLYRVLKEDTYSLTFEITVNYKTMHIAVNPYGLVFTVYPKVKSRADEFQYKYNRYLGAFKPPVDYLPTITADDLVDDVVEGTVW*
Ga0079957_100115035F004583AGGAGGMRTIKNSERLKEILYSTRSQIVSLKDIQIDMLKSDAKVASAIATQISALEEVYKHQLTLVEKAQSLEPKKTGWFSGQIKTKEDRLANVLD*
Ga0079957_100115044F039133N/AMNTTDKVIVKFKSRVPYMLYTAHYNGLLLASGRDPIDLGEYYASKYCTEWILQDGNNFYTQRGVNK*
Ga0079957_100115045F015472AGGAGMQTFYLNNGGTRWYSAGKIRVTGEVKGKSYDKMRQPMFWEQLGNFAVCYVKVGNTVFCGFTNDDNGTIQLKLEKCRVVR*
Ga0079957_100115046F033432AGGMSEYRKKFLSLWSAIMTEERWHKFESQACIPSCKGWNAWAPLCECGKNYCTFKPSGKLEDMQMVIEARPLDF*
Ga0079957_100115047F057375GGAGGMNQTVDFVNASDFFEAIELGGFESQEFLDQFTYGDSLTDFTLIARTTFIQRLTKFIGDCEDIAEKDVMMQALKEFTFGLLGGIKHVNIEG*
Ga0079957_100115048F027516GGAGMTYQDYIIKCEVAKTVFQCGVTSALSVEIATPEQRLAWIAEDLKKLETELEQIGKAFDEQDEVGDPFVVEVK*
Ga0079957_100115049F011390AGGAMEIKTTNYGICSVKKNKYPSNGNLALSLIDETGCPVTNITTNIFPMAENEFCANIYNIGITLWNDIVASGLFEETGEKVPSGYCEYPVCKLVKELA*
Ga0079957_100115050F039633AGGMSEYPGYKNRATFVASVCLSESIKTLRDENPKMSILDVKRECLEFLLQNSNHRFVHQFIHVIADDIDWEFLYNDSMTIKALQ*
Ga0079957_100115051F033793GAGMILGQDPNSTRPIGTEKTLKEAKEYILSRAYNNDYCAIYVADDENPAGELVGRWIVKNKKLTSFEKKTKPIDYKKKIF*
Ga0079957_100115053F007752N/AMENTTMQLWEVNGFQSSSVKTLFVGKTANGQDCIGCAWDAYTTYIYAYDGIIDTFMYYMERYNSVGKAMAFTKLKDGMEDGFYVKPYTTGMKQQVHNQLYRFRSYDMMRHMSNIVVHQNVCFDTPENAIKNLISSGDIECEKSHFVACMTNKVTA*
Ga0079957_100115056F025741N/AMENTTITQFVNDHVEGDPAFKGYVVCELKILVKQNPTLSLSELLQDATESALEAWDMDQSQDW*
Ga0079957_10011506F023349N/AMKFVLYEVTDDYDVIIKLSFENYIYLNAFLEQHTADKKYTPKFLVMELNAEGDIDFLSEYTGTTQNYRKCLAEFIE*
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