Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1001168 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1001168 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24170
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (72.73%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

24170

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (72.73%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F002085	Metagenome / Metatranscriptome	595	Y
F054870	Metagenome / Metatranscriptome	139	N
F062760	Metagenome	130	N
F063689	Metagenome	129	Y
F066774	Metagenome / Metatranscriptome	126	Y
F073551	Metagenome	120	Y
F082685	Metagenome	113	N
F104778	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100116811	F063689	N/A	MITTMEVLFRYLVFDDVGEPIMRFRTKHEAECYILHRPNHKIQRLAPKPKENPFDLIKDEPPF*
Ga0079957_100116813	F104778	AGGA	METKAWLIEEYSKDGQLVWKMISFFEPDSIQWMRDIRGKSHNLVISELGVKNSKTINGIEKKYDSSKFVIGH*
Ga0079957_100116814	F066774	GAG	MTQDNTMASLELWVKQLQGTLDVQEIARTKPAPIPDIAIPYLVFLRPYDKVGLLASTNKRRFTKCNIEFLFDGNTRKLKDVKMINQDDEDGN*
Ga0079957_100116819	F054870	AGGA	MKLLTALLIALPIASFAGEPAKLRYNWVEKKWNYAPKEAKLKYNWTADQYEFVMPGSQLKFNTQSNNYEYVQTQISNPYKSEIGE*
Ga0079957_100116830	F082685	AGTAG	MDMQEHTKHALDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK*
Ga0079957_100116831	F073551	N/A	MQTSHETIDDIFNFLQNKTIKDIDADYHDNKNYLVILLSDGSICYISSSDSLFMAIERHVIN*
Ga0079957_100116836	F001991	GAGG	MAIFNKNTLQQVSGFDNEIIAGELVYNQKTFWNLAFNSNGAPVNLTGATIDASIIRRQLSNIRDSRYGLTFDIADYTPPPSPVSLTISNRVDAAGTFTLEIDESTWSVISTDPQLDINAQNCVGFSGRIKISFPASGSTPAQDMIIFLLFLVRSDGVVN*
Ga0079957_100116842	F002085	AGAAG	MDNIVPLQNTNNIRMADFVRVTTATATYRFATTPSVLTIPAVDSQPFDALGSLIKISDVQRDIKSTSNETSITLVGIDTALLGWVLGHDIKGSLIEMWHGFFNDQNELITTGGTGGLYKFFTGYISSFQISEQYMEEAREYVGVITASASSIQIILQNRTAGRYTNNNAWTFWNSGDTSMNRVNFIETINYAFGKDT*
Ga0079957_100116843	F000934	AGCAG	MATLNQILAVSESVGINDHRFIGQTLSRNQRIATSEILTVQPFMFDMKPMNYLLYSQNRTLLSTLRSADRQFEQYLNFGSTGWWNYIAYQGNMSSAQISACQYETSSANKTIVLGSLPTMGSTEYIVKAGDFLQINRYAYIATADVQRGGGSTVNIPVHRTIMTTLTSPMSAVIGQYGITQSLGGNTYIGVTFPVILQEYPTYTFVPMTNDSFINWNGTFKAIEAVL*
Ga0079957_10011686	F062760	N/A	LEELIKQGKLPQVTIKEKADSKRSLEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTINGVQVPYVRSTTDLTVEEFTNYIQQIESYFAQLGWSID*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1001168

Overview

Ecosystem & Geography

Associated Families

Sequences