Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1002019 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18129 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (80.65%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F003378 | Metagenome / Metatranscriptome | 490 | Y |
F022860 | Metagenome / Metatranscriptome | 212 | Y |
F027495 | Metagenome | 194 | Y |
F033780 | Metagenome | 176 | Y |
F056573 | Metagenome | 137 | Y |
F060870 | Metagenome | 132 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079957_100201921 | F022860 | AGGA | MKKVFAYLADQTWTLAGTGLVLITLSGPTLRQALWLTGVALVLHSVLTFTGGKDE* |
Ga0079957_100201922 | F003378 | AGGGGG | MNEVMLKANATVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSAMLAGFMACVQVIQKLAAASTDGELTKEEIQEAFGKK* |
Ga0079957_100201924 | F060870 | GGA | MDGGWALVVAAVVTAVGGIIVAVLQKFREENHKDHAYVQGLLAMLYKSQNRIESKVERVDERLSNHLDFHASEGMLDNERTVHQDGVEETRNLSA* |
Ga0079957_100201927 | F033780 | GAGG | MTPCPWSLVAIHWIDAFDSTNGWIQTRDYKPKPQHVVSVGWLWPDILEGYLSVTCSWCPEEEPEMDTVGMVTHIPVGMVQKVVVLGNPEL* |
Ga0079957_10020195 | F056573 | GAG | MSIFRPPTDDFVVLGIPPKEFDSQEVRVAYNLFRHFEPEPRGRNVFKLTDGTFTENEPNDNTTIAKVYWGGTDNEVTAAEVAELTAAGYGAYIS* |
Ga0079957_10020196 | F027495 | AGG | MKHRETHPNLDVDGCFACRISHVRMSGAAMPTRHNVAQLNSKERALDKDLDAYKRIRQTGGQPTKIDGSAKLEKIAD* |
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