NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1002019

Scaffold Ga0079957_1002019


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1002019 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18129
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (80.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003378Metagenome / Metatranscriptome490Y
F022860Metagenome / Metatranscriptome212Y
F027495Metagenome194Y
F033780Metagenome176Y
F056573Metagenome137Y
F060870Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100201921F022860AGGAMKKVFAYLADQTWTLAGTGLVLITLSGPTLRQALWLTGVALVLHSVLTFTGGKDE*
Ga0079957_100201922F003378AGGGGGMNEVMLKANATVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSAMLAGFMACVQVIQKLAAASTDGELTKEEIQEAFGKK*
Ga0079957_100201924F060870GGAMDGGWALVVAAVVTAVGGIIVAVLQKFREENHKDHAYVQGLLAMLYKSQNRIESKVERVDERLSNHLDFHASEGMLDNERTVHQDGVEETRNLSA*
Ga0079957_100201927F033780GAGGMTPCPWSLVAIHWIDAFDSTNGWIQTRDYKPKPQHVVSVGWLWPDILEGYLSVTCSWCPEEEPEMDTVGMVTHIPVGMVQKVVVLGNPEL*
Ga0079957_10020195F056573GAGMSIFRPPTDDFVVLGIPPKEFDSQEVRVAYNLFRHFEPEPRGRNVFKLTDGTFTENEPNDNTTIAKVYWGGTDNEVTAAEVAELTAAGYGAYIS*
Ga0079957_10020196F027495AGGMKHRETHPNLDVDGCFACRISHVRMSGAAMPTRHNVAQLNSKERALDKDLDAYKRIRQTGGQPTKIDGSAKLEKIAD*
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