NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1002753

Scaffold Ga0079957_1002753


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1002753 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15233
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009526Metagenome / Metatranscriptome316N
F009679Metagenome / Metatranscriptome314Y
F009746Metagenome / Metatranscriptome313N
F031795Metagenome181N
F036209Metagenome / Metatranscriptome170Y
F048270Metagenome148Y
F058100Metagenome / Metatranscriptome135N
F090105Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100275310F031795N/AVTVYTPFPKVIFAGVNEYADNTISNISISLGRRDIYEQALVGIANVRLWTDADTALNVNLSDSIQIQVKDSTHAYRTIYTGTISDLNVSLDAYGDKGSVAVYSITAVGPLAILNRFTTGGDGFAKEFDGTRVLNILSDAFLENWDEVVPTLTWSAVSSLATWDNWGGANQTLVDNLIADIDTPGTYELTAYSDGVANALTLAQNAAQSGRGFLYEAPDGSIHYDSYTSRATLTPLTLTDDDLLAVGLRQAAQWSEIVNDVTLTYKNNQEVYAADYTSQQSFGELSGTRSTQLENGSDAQSQADAFLKSRAYPRTYPEELTIPLHSPTVSDATRDALILMHVGSAVYTQDLPAVFGGTFDGFVEGIKWNIDRYTANMTLICSAISETYPHLIWLQIAPTVTWAGYTPSTTEWQDL*
Ga0079957_100275313F090105AGGAMTFLTWFAHSPLASFVKVFGAGFLGWLLVNIDTLGIHPAITIGLVSALPILINWLNPEYTNYGRANLDEAD*
Ga0079957_100275316F048270N/AMNELINAGQLAAALIAILTLIGMLVKWGIVKPIKAYIDTMTYAIQPYANGGKSLPDLINKVDALHLVVQNHIDTRHDTPVFSKCLCESCLTC*
Ga0079957_100275320F058100AGGMDNKDEMFISILKKLYGAYDASHYFAESCEVCHETLSPFDIGVDPYTDTRTWMTKCCGVVNTYNQKLSPQI*
Ga0079957_10027534F009679AGGAMALITLSELKAVLGIGDIYADAIVQAVADSAENIILSYLIFDDVAIRSVKLKDNVATFYCFENTFVTGQALTVTKCGAPFDGSRTVLESGYDAYEVPYFTAAITNADIIQKQIIPSGRAVLTSQAALYDTTPEVREAAMAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYIG*
Ga0079957_10027535F009746GAGGLADLATYRANLAATLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALKNLETLIFSVTDLLANNISLLGGWSQPTVTQIGNADMLISQLNIEMVTTN*
Ga0079957_10027536F009526AGGMPATYITGRNLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAALAAPDTSLTFSFDVNGDTFAGKVFPVFPTVGGAATDVLTTSLSFVVEDGAVTRT*
Ga0079957_10027538F036209GAGMVMAEKVTVKMTPDSRDLRSLYKAFREMDEGAKKALKDDVTSISQWSATEMQSSYNLNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPERSRPQGRGNEGYGIFITLKRIQPELTRRWKDAVSRRVIEKWDDNNG*

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