Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1002753 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15233 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (79.17%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009526 | Metagenome / Metatranscriptome | 316 | N |
F009679 | Metagenome / Metatranscriptome | 314 | Y |
F009746 | Metagenome / Metatranscriptome | 313 | N |
F031795 | Metagenome | 181 | N |
F036209 | Metagenome / Metatranscriptome | 170 | Y |
F048270 | Metagenome | 148 | Y |
F058100 | Metagenome / Metatranscriptome | 135 | N |
F090105 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079957_100275310 | F031795 | N/A | VTVYTPFPKVIFAGVNEYADNTISNISISLGRRDIYEQALVGIANVRLWTDADTALNVNLSDSIQIQVKDSTHAYRTIYTGTISDLNVSLDAYGDKGSVAVYSITAVGPLAILNRFTTGGDGFAKEFDGTRVLNILSDAFLENWDEVVPTLTWSAVSSLATWDNWGGANQTLVDNLIADIDTPGTYELTAYSDGVANALTLAQNAAQSGRGFLYEAPDGSIHYDSYTSRATLTPLTLTDDDLLAVGLRQAAQWSEIVNDVTLTYKNNQEVYAADYTSQQSFGELSGTRSTQLENGSDAQSQADAFLKSRAYPRTYPEELTIPLHSPTVSDATRDALILMHVGSAVYTQDLPAVFGGTFDGFVEGIKWNIDRYTANMTLICSAISETYPHLIWLQIAPTVTWAGYTPSTTEWQDL* |
Ga0079957_100275313 | F090105 | AGGA | MTFLTWFAHSPLASFVKVFGAGFLGWLLVNIDTLGIHPAITIGLVSALPILINWLNPEYTNYGRANLDEAD* |
Ga0079957_100275316 | F048270 | N/A | MNELINAGQLAAALIAILTLIGMLVKWGIVKPIKAYIDTMTYAIQPYANGGKSLPDLINKVDALHLVVQNHIDTRHDTPVFSKCLCESCLTC* |
Ga0079957_100275320 | F058100 | AGG | MDNKDEMFISILKKLYGAYDASHYFAESCEVCHETLSPFDIGVDPYTDTRTWMTKCCGVVNTYNQKLSPQI* |
Ga0079957_10027534 | F009679 | AGGA | MALITLSELKAVLGIGDIYADAIVQAVADSAENIILSYLIFDDVAIRSVKLKDNVATFYCFENTFVTGQALTVTKCGAPFDGSRTVLESGYDAYEVPYFTAAITNADIIQKQIIPSGRAVLTSQAALYDTTPEVREAAMAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYIG* |
Ga0079957_10027535 | F009746 | GAGG | LADLATYRANLAATLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALKNLETLIFSVTDLLANNISLLGGWSQPTVTQIGNADMLISQLNIEMVTTN* |
Ga0079957_10027536 | F009526 | AGG | MPATYITGRNLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAALAAPDTSLTFSFDVNGDTFAGKVFPVFPTVGGAATDVLTTSLSFVVEDGAVTRT* |
Ga0079957_10027538 | F036209 | GAG | MVMAEKVTVKMTPDSRDLRSLYKAFREMDEGAKKALKDDVTSISQWSATEMQSSYNLNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPERSRPQGRGNEGYGIFITLKRIQPELTRRWKDAVSRRVIEKWDDNNG* |
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