Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1002753 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1002753 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15233
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (79.17%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

15233

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (79.17%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F009746	Metagenome / Metatranscriptome	313	N
F031795	Metagenome	181	N
F036209	Metagenome / Metatranscriptome	170	Y
F048270	Metagenome	148	Y
F058100	Metagenome / Metatranscriptome	135	N
F090105	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100275310	F031795	N/A	VTVYTPFPKVIFAGVNEYADNTISNISISLGRRDIYEQALVGIANVRLWTDADTALNVNLSDSIQIQVKDSTHAYRTIYTGTISDLNVSLDAYGDKGSVAVYSITAVGPLAILNRFTTGGDGFAKEFDGTRVLNILSDAFLENWDEVVPTLTWSAVSSLATWDNWGGANQTLVDNLIADIDTPGTYELTAYSDGVANALTLAQNAAQSGRGFLYEAPDGSIHYDSYTSRATLTPLTLTDDDLLAVGLRQAAQWSEIVNDVTLTYKNNQEVYAADYTSQQSFGELSGTRSTQLENGSDAQSQADAFLKSRAYPRTYPEELTIPLHSPTVSDATRDALILMHVGSAVYTQDLPAVFGGTFDGFVEGIKWNIDRYTANMTLICSAISETYPHLIWLQIAPTVTWAGYTPSTTEWQDL*
Ga0079957_100275313	F090105	AGGA	MTFLTWFAHSPLASFVKVFGAGFLGWLLVNIDTLGIHPAITIGLVSALPILINWLNPEYTNYGRANLDEAD*
Ga0079957_100275316	F048270	N/A	MNELINAGQLAAALIAILTLIGMLVKWGIVKPIKAYIDTMTYAIQPYANGGKSLPDLINKVDALHLVVQNHIDTRHDTPVFSKCLCESCLTC*
Ga0079957_100275320	F058100	AGG	MDNKDEMFISILKKLYGAYDASHYFAESCEVCHETLSPFDIGVDPYTDTRTWMTKCCGVVNTYNQKLSPQI*
Ga0079957_10027534	F009679	AGGA	MALITLSELKAVLGIGDIYADAIVQAVADSAENIILSYLIFDDVAIRSVKLKDNVATFYCFENTFVTGQALTVTKCGAPFDGSRTVLESGYDAYEVPYFTAAITNADIIQKQIIPSGRAVLTSQAALYDTTPEVREAAMAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYIG*
Ga0079957_10027535	F009746	GAGG	LADLATYRANLAATLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALKNLETLIFSVTDLLANNISLLGGWSQPTVTQIGNADMLISQLNIEMVTTN*
Ga0079957_10027536	F009526	AGG	MPATYITGRNLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAALAAPDTSLTFSFDVNGDTFAGKVFPVFPTVGGAATDVLTTSLSFVVEDGAVTRT*
Ga0079957_10027538	F036209	GAG	MVMAEKVTVKMTPDSRDLRSLYKAFREMDEGAKKALKDDVTSISQWSATEMQSSYNLNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPERSRPQGRGNEGYGIFITLKRIQPELTRRWKDAVSRRVIEKWDDNNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1002753

Overview

Ecosystem & Geography

Associated Families

Sequences