NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1006158

Scaffold Ga0079957_1006158


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1006158 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9633
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000340Metagenome / Metatranscriptome1267Y
F002370Metagenome / Metatranscriptome566Y
F096920Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100615810F002370AGGAGMMDAKKAAKSAVHKHEKAMHPGKPVTKLAKGGKTNEQMRKLGRNLAKVANQKVSSFKYKSSRGG*
Ga0079957_10061582F096920AGGAGMPGIRKPTEKEVAKLEQSRQLMQKGIEGERDILSKFSTTMAKSARDDMRAAKAMRESVPESAREYEAYQQAGYKAGGKVGSPSKRADGCCVRGKTKGKMVAMV*
Ga0079957_10061584F000340GGTGGMAWSDVLKAVIPIVVAALAWLLGQVASFSERLTKIEGQMPALITKEGVPTDSPISAERRAILKEQMMQHINELQVKVRLLEERERLSKK*
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