Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1013172 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1013172 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6120
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6120

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001731	Metagenome	644	Y
F001897	Metagenome / Metatranscriptome	620	Y
F003182	Metagenome / Metatranscriptome	502	Y
F009883	Metagenome / Metatranscriptome	311	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101317215	F001731	N/A	MSIFNPVWRVTIGGVQYQTAILANLTITTGRTNIYEQAQAGYTNLEIINLDQSNVPIQINDAITIELQDSTVTFVPIFGGSVVEVGISVAEVGSVDYAQRINILALGALARLPKALTDGFLQDDFDGDQIFTILSKVLFSSWEEVPQALTWATYDPAVQWQDAENSGLGDIDRPGNYELENRSSDRIDVYSLVSALATSGLGYIYEDAQGRIGYADSTHRTNYLAANGYVELTANHALASGLSIQSRTGDVRNNITLKYGQNSNNEVSAISTESVGLYGQLSQIFTTTIKHTADAQDQADFYLELRAFPRFNFNNITYELTNPELDDADRDALINVFMGMPVEIADLPLNMNSGDYLGFVEGWTFSARYNQISISMILSPISFSLQAMRWNDVPVVEAWNTVNPTLDWINATIVA*
Ga0079957_10131724	F003182	AGGAG	MHILQFDCSICKKLYGKPKQRHGLKKGAELTAHEWFAQCMGCGTFGIKLVDDDRIGELSDGLL*
Ga0079957_10131725	F000903	AGGA	MIAAIQHCHDRSADHSSRIVRNLSWFEYVAQNAESMVSEWVVAKALGYDYTPGITWDKSKADVGEHIEVKWSNNPHSNLWIQESDRHDRDIAVLVTGNSPKMHIAGWIPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPSV*
Ga0079957_10131726	F000403	GGAG	MSDYVEILNPQTMTGRLYFEGKVIEEYKIEQCDKCSKLNKFDPFGYQIGYDKTEKIIWFCGDCR*
Ga0079957_10131727	F001897	AGGTGG	MSFMDNYEGNKERTDRWIATFPQGRLESHIVEFDFAKGYVLVQAKAWRNQEETEPAGIDYAHGFLTAYSSKMARWMIEDTVTSALMRVMALVMGGTEKATKETMEKVNAADVYDPWATKFGNVPSYKTADEAEMSGIPSFGSSQETPAAPECHHGPMRWNQSKPEAPKSWGGYFCSEKTKEHQCTPRWYVLRSTGKWEPQV*
Ga0079957_10131728	F009883	GGAG	MNELSIVIFMIIAGAFWAVMSYAVGFKEGQRQGYTRGRAVARHAVSADRKVAK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1013172

Overview

Ecosystem & Geography

Associated Families

Sequences