Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1013172 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6120 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F000903 | Metagenome / Metatranscriptome | 843 | Y |
F001731 | Metagenome | 644 | Y |
F001897 | Metagenome / Metatranscriptome | 620 | Y |
F003182 | Metagenome / Metatranscriptome | 502 | Y |
F009883 | Metagenome / Metatranscriptome | 311 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079957_101317215 | F001731 | N/A | MSIFNPVWRVTIGGVQYQTAILANLTITTGRTNIYEQAQAGYTNLEIINLDQSNVPIQINDAITIELQDSTVTFVPIFGGSVVEVGISVAEVGSVDYAQRINILALGALARLPKALTDGFLQDDFDGDQIFTILSKVLFSSWEEVPQALTWATYDPAVQWQDAENSGLGDIDRPGNYELENRSSDRIDVYSLVSALATSGLGYIYEDAQGRIGYADSTHRTNYLAANGYVELTANHALASGLSIQSRTGDVRNNITLKYGQNSNNEVSAISTESVGLYGQLSQIFTTTIKHTADAQDQADFYLELRAFPRFNFNNITYELTNPELDDADRDALINVFMGMPVEIADLPLNMNSGDYLGFVEGWTFSARYNQISISMILSPISFSLQAMRWNDVPVVEAWNTVNPTLDWINATIVA* |
Ga0079957_10131724 | F003182 | AGGAG | MHILQFDCSICKKLYGKPKQRHGLKKGAELTAHEWFAQCMGCGTFGIKLVDDDRIGELSDGLL* |
Ga0079957_10131725 | F000903 | AGGA | MIAAIQHCHDRSADHSSRIVRNLSWFEYVAQNAESMVSEWVVAKALGYDYTPGITWDKSKADVGEHIEVKWSNNPHSNLWIQESDRHDRDIAVLVTGNSPKMHIAGWIPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPSV* |
Ga0079957_10131726 | F000403 | GGAG | MSDYVEILNPQTMTGRLYFEGKVIEEYKIEQCDKCSKLNKFDPFGYQIGYDKTEKIIWFCGDCR* |
Ga0079957_10131727 | F001897 | AGGTGG | MSFMDNYEGNKERTDRWIATFPQGRLESHIVEFDFAKGYVLVQAKAWRNQEETEPAGIDYAHGFLTAYSSKMARWMIEDTVTSALMRVMALVMGGTEKATKETMEKVNAADVYDPWATKFGNVPSYKTADEAEMSGIPSFGSSQETPAAPECHHGPMRWNQSKPEAPKSWGGYFCSEKTKEHQCTPRWYVLRSTGKWEPQV* |
Ga0079957_10131728 | F009883 | GGAG | MNELSIVIFMIIAGAFWAVMSYAVGFKEGQRQGYTRGRAVARHAVSADRKVAK* |
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