NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074474_1322755

Scaffold Ga0074474_1322755


Overview

Basic Information
Taxon OID3300005824 Open in IMG/M
Scaffold IDGa0074474_1322755 Open in IMG/M
Source Dataset NameMicrobial communities from Baker Bay sediment, Columbia River estuary, Washington - S.180_BBC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44787
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (25.49%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameIlwaco, Washington, USA
CoordinatesLat. (o)46.26975Long. (o)-123.94603Alt. (m)Depth (m).02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012217Metagenome / Metatranscriptome282Y
F039101Metagenome / Metatranscriptome164Y
F056576Metagenome / Metatranscriptome137N
F105059Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0074474_13227553F039101N/AMAVTATVDKFGMEFTGAYHKVNRLNYESSDVKSYNYVPATPTVDEDGNPVPPVATAPEEVWAKVQRCNFEVATYASIATRDAHAEPIYRSHYNFTPSIDAEAADILVQAYEHLKAQEGYEDSVDC*
Ga0074474_132275530F012217GGAMKYRVNYTYFDQSKMRAAKWEQREKDFDTKEEARDFVGKIEWNVAVRNVNIQPVL*
Ga0074474_132275551F105059N/ACGDGCCYDWGYDVFVDGEKIGQINDTPEELADLLNEYFNTKEK*
Ga0074474_13227559F056576N/AMTRSESVGATFLSTAISWVTIDINPLLSGLASVFAIVLSAFLIYKTYLEIKIRKNQLK*
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