Scaffold Ga0074478_1740117

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0074478_1740117

Scaffold Ga0074478_1740117

Overview

Basic Information
Taxon OID	3300005827 Open in IMG/M
Scaffold ID	Ga0074478_1740117 Open in IMG/M
Source Dataset Name	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	601
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Cathlamet Bay
Coordinates	Lat. (^o)	46.186944	Long. (^o)	-123.686944	Alt. (m)		Depth (m)	.02
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031716	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074478_17401172	F031716	AGGA	MSRFSPGPWKVEEENGSYGVFSNDALLAVILSDELKDKGAAKANAHLMASAPRLLEVIKEIKEHLDNNLIVTGEGLKINDSHLRESIIDAILKAEGYRL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.