Scaffold Ga0074479_10565911

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074479_10565911

Scaffold Ga0074479_10565911

Overview

Basic Information
Taxon OID	3300005829 Open in IMG/M
Scaffold ID	Ga0074479_10565911 Open in IMG/M
Source Dataset Name	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8735
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Cathlamet Bay
Coordinates	Lat. (^o)	46.208333	Long. (^o)	-123.6925	Alt. (m)		Depth (m)	.02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019788	Metagenome / Metatranscriptome	227	Y
F031342	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074479_105659111	F019788	AGGAG	LKTDFKAASVLERLGETLSDADLAYQVGEGIHEFIVRLGGLRHVVDFTDDLMEKKNDFDLSVVILVIVERASTQSLPVHFMVR
Ga0074479_105659116	F031342	GAGG	MMFDSLSDLTSRPARGAVQILQEGIQTLFHLLLFSLLLLGFGGLIYKALRNGGWVESLLSNFWALHPALAITALLATVGVAAGVGRYFDRRTMFGKRGDVLVYGCLALGLFFAFKLVVTGSL*

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