Scaffold Ga0074473_10349589

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074473_10349589

Scaffold Ga0074473_10349589

Overview

Basic Information
Taxon OID	3300005830 Open in IMG/M
Scaffold ID	Ga0074473_10349589 Open in IMG/M
Source Dataset Name	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	38546
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (48.48%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Astoria, Oregon, USA
Coordinates	Lat. (^o)	46.17784	Long. (^o)	-123.85335	Alt. (m)		Depth (m)	.02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004136	Metagenome / Metatranscriptome	451	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074473_1034958931	F004136	GAG	MKAIPVQEAQGQLGQLIAEACRGEVIVLTDGDKRVTLEPGVALDLEEDSPELEAELLKAAKGPFTPYSSEEMRAACEKVIREKRG*

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