NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074473_11223587

Scaffold Ga0074473_11223587


Overview

Basic Information
Taxon OID3300005830 Open in IMG/M
Scaffold IDGa0074473_11223587 Open in IMG/M
Source Dataset NameMicrobial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1113
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameAstoria, Oregon, USA
CoordinatesLat. (o)46.17784Long. (o)-123.85335Alt. (m)Depth (m).02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012957Metagenome275Y
F013621Metagenome269N

Sequences

Protein IDFamilyRBSSequence
Ga0074473_112235872F013621AGGAGMISQEEAKDFIRRYREVILETPYGEIHVCGSKEVYEELIGQGKLAFSPIELLQLQKATENGSLETIVKIKNSVPGARIKDIIPVDKKPDSTQKQS*
Ga0074473_112235873F012957GGAGGMDKPFLQTLNLYRSKSALQISPSPELALVFVSLAAVIPGMENKMPDKNTKKYLWDKKLTASFNFEGALEVAAAAAALAEGKESLVADSKGTLPSWYRDPAKCGRDGNAKIIGFYRPKEPANGSKVRYFLGITENNKSKDGQKIGIALEYPDLFKISRVMEESALAILGWRKQIEARYNANGHASLGTSDPHTS
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