Scaffold Ga0074472_11176685

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074472_11176685

Scaffold Ga0074472_11176685

Overview

Basic Information
Taxon OID	3300005833 Open in IMG/M
Scaffold ID	Ga0074472_11176685 Open in IMG/M
Source Dataset Name	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3323
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Cathlamet Bay
Coordinates	Lat. (^o)	46.18749	Long. (^o)	-123.58892	Alt. (m)		Depth (m)	.02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054395	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074472_111766855	F054395	AGG	MVKLCDQAVDVLIGPLVEQVGPGQLWERCLHCNGLFNGTLFDAMTVVRRQAGESLLEGLDVEEGDGKGADATAGAAESAGNFTQQSGGCPLEPVVGFLIQGRRVERSETCHNRSLYFDGEVDDEIAIGGVEALVIDLDDPVALVLVEF*

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