NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078910_102382

Scaffold Ga0078910_102382


Overview

Basic Information
Taxon OID3300005835 Open in IMG/M
Scaffold IDGa0078910_102382 Open in IMG/M
Source Dataset NameBiogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNorwegian Sequencing Centre (NSC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7861
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities

Source Dataset Sampling Location
Location NameAlnarp, Sweden
CoordinatesLat. (o)59.8152338Long. (o)17.6620518Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004383Metagenome / Metatranscriptome440Y
F011593Metagenome / Metatranscriptome289Y
F033483Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0078910_10238215F033483GGAGGVTPGDASVTLDIDGLPVVLVLPERDVDLMMWTYRANRILQEGRDDE*
Ga0078910_10238218F011593GGCGGMTDNGLAAPAWCRGCPDPIYDXRRGEWDWYXRQHSPTGIRCSNVAVLRERCYRVREYFAKKEATL*
Ga0078910_1023822F004383GGAGGMSSDNLLERAFMARIRADEHRAELKSLQQEFDERPGCHRPQAPDRALRGGAPAVHRAGAGRGVTKQGSFRLKIRTRKTRTVIPERFFARFGAEAFVKCSTVAIGKAEALLGKGTFDDCCEVAVKDLGATVEYVRPEGSE*
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