NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078910_118672

Scaffold Ga0078910_118672


Overview

Basic Information
Taxon OID3300005835 Open in IMG/M
Scaffold IDGa0078910_118672 Open in IMG/M
Source Dataset NameBiogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNorwegian Sequencing Centre (NSC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1301
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities

Source Dataset Sampling Location
Location NameAlnarp, Sweden
CoordinatesLat. (o)59.8152338Long. (o)17.6620518Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F066897Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0078910_1186721F022008GGTGGMTEIEVLREALNDLSKQVQTLSDENRTSFGRIYDRLTKIETQMSEREYQFKRYEKTIENHEMRIRTVEGELGALRDVPEKLWKVSMSNSKLTGMVAAAGGVGGLVATIITVVLKSLGE*
Ga0078910_1186722F066897AGAAGGMNSKAFWLIIIAVILLSAVFLWYNHTSTQETLIKAQETIEETKQALHESQEALKKIDKIAQDIKEVTQNAEKAGDEYVKEVLLVSDDEFLNRLNQYSTVMVERVKHLE*
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