Scaffold Ga0078893

Basic Information
Taxon OID	3300005837 Open in IMG/M
Scaffold ID	Ga0078893_10144435 Open in IMG/M
Source Dataset Name	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005837 Open in IMG/M

Scaffold ID

Ga0078893_10144435 Open in IMG/M

Source Dataset Name

Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Australian Centre for Ecogenomics

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7127
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (4.55%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

7127

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (4.55%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location Name	Port Hacking, Australia
Coordinates	Lat. (^o)	-34.1192	Long. (^o)	151.2267	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Port Hacking, Australia

Coordinates

Lat. (^o)

-34.1192

Long. (^o)

151.2267

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027054	Metagenome / Metatranscriptome	196	N
F029763	Metagenome / Metatranscriptome	187	Y
F032856	Metagenome / Metatranscriptome	179	N
F034391	Metagenome / Metatranscriptome	175	N
F049006	Metagenome / Metatranscriptome	147	N
F070144	Metagenome / Metatranscriptome	123	N
F093906	Metagenome / Metatranscriptome	106	N
F100982	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1014443512	F070144	N/A	MEKVNPENMSGDNWSVTKHPLHEGKYVARHINIWGSESHTVDSLIEAMDIIKKFKNQEDWILQKREEFGDYMWRNDDFRKDITKGT*
Ga0078893_1014443513	F032856	N/A	MDEAKYRYWTKEYSDHLIEDVSDELVDEYEADNPTNEANANDEFVVDEDYVMQLIEYWVDNYTIGNNKCKEIVDNLDYDIFEIDMEFGTRPDSWKQAGVWALDHAIHTDDNIEAIYKLTNEKLQELWKK*
Ga0078893_1014443514	F034391	N/A	MTNYSKQYDNKLLEGILDHMANELKGEFGFETLDAEDKLDVIALFVDNPTSYETSYLHSIETEDTEVIPSKEKSNVEILQDLSNYTRYDG*
Ga0078893_1014443517	F027054	N/A	MAKQKKETSRHWTVELNIGQLKNMAPLKHSKRIGYYHGTHNLNQVKRTVQKRFDGGSGECVKAMFQFQGEYNDKPETTFYIAFSFYGGIETFKDEDGLEGEYMTHADLKKLEDKLTILCMELEQECIAYNIKEWTSSTFYPTGKQDLIYHPNYDGEQMIFEDEYFMTFGYHKLSSFEKLHTV*
Ga0078893_1014443519	F049006	N/A	MTQPEFLDVCSRHGVNQWIVMDDLLLSGKQHPHDLTVNELNEFMWSTY*
Ga0078893_101444352	F029763	N/A	MATSFCYTQSNSIPPELYGNWYNLDQELLIIQPNNTFTRRNTKGILAQGKLEIIDGELRVTRTDVSDEYDLLFHIGNTSLVVTKPRSQQAWLFYKLGN*
Ga0078893_1014443521	F100982	N/A	MYINFKQIDKLENILNSITTSNIDVDNIKDLNENQRTYLRNEIISYMDKILNLN*
Ga0078893_101444359	F093906	N/A	MMMFLNTNGRKGISSFNLNFEFTDEQIKLLQTYGNQITAIYYSEKNNKGKLKIQATEQPI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078893_10144435

Overview

Ecosystem & Geography

Associated Families

Sequences