NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0078893_10298642

Scaffold Ga0078893_10298642


Overview

Basic Information
Taxon OID3300005837 Open in IMG/M
Scaffold IDGa0078893_10298642 Open in IMG/M
Source Dataset NameExploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4089
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007621Metagenome / Metatranscriptome348Y
F012403Metagenome / Metatranscriptome281Y
F017755Metagenome / Metatranscriptome239Y
F031294Metagenome183N
F032478Metagenome / Metatranscriptome180N

Sequences

Protein IDFamilyRBSSequence
Ga0078893_1029864210F031294AGGAGMKFEMLDLFLIAMLMVAVFFGLAMLSLHGIGYMTWLSWTMFGCSAWCLICGWVIVAYNLENRNG*
Ga0078893_1029864211F007621AGGAMENSTSIAVISTLEAEGKALAQEWKAISKADKARFTKSTKADGFDTRLGKLMLKLKAEGGERISSARLKDCGIAGIDKRRRSEAMWFVENEDTCRSFIKTSKKGFTSLTALQAAMRKADKAEQPKADKADKPASEADTKSNDGLNSEAETAQAKSPSDIALDALVQCELNGITVKDFMLALKEQLEMLDTEKAVA*
Ga0078893_102986422F032478AGGMYWEIGIKMDGVSGVYNVHPQPLAESVWNHAVEHAMDMAQALYPNAHIELEFVKEFETE*
Ga0078893_102986425F012403GGAGMRIKTINPVAKALLQSNRRRSQVVPDKTKYNRKKDKHNANQARQHEEPKDN*
Ga0078893_102986429F017755GGAGMAKRGAIVDMGKHKPVGSSWRSMDSMAYSRSYEPETRPEFRVYVTGQADAMLEHYKKTVDKAEALAILDSMM*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.