Scaffold Ga0078893

Basic Information
Taxon OID	3300005837 Open in IMG/M
Scaffold ID	Ga0078893_10448420 Open in IMG/M
Source Dataset Name	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005837 Open in IMG/M

Scaffold ID

Ga0078893_10448420 Open in IMG/M

Source Dataset Name

Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Australian Centre for Ecogenomics

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32012
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (22.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

32012

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (22.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location Name	Port Hacking, Australia
Coordinates	Lat. (^o)	-34.1192	Long. (^o)	151.2267	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Port Hacking, Australia

Coordinates

Lat. (^o)

-34.1192

Long. (^o)

151.2267

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F080238	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1044842018	F038672	N/A	MNELDVILRRNKLDIMIIKASHQLQKSKDKTKQEGLDTLIDIINLIRELQDEIREQSRTIAKLKLDNAVSYKENAILKTDFEKYKDSLIKAELETPKKK*
Ga0078893_1044842023	F030436	N/A	MKLTLNRIAELIEEYNSTDIFDGNTLNKQLKELTSRLYHIETMRTKAHEDYEKIIHNKVAEGFSVARATNEANVEVPEMYKLRRLLESGYRVVDSMRTNISFLKSEMYNTPKDY*
Ga0078893_1044842024	F056150	N/A	MDKKLIKKIENFILCIGREYNVVEIEDFKQDILILLLNKGEDFILQLDKENSIKKYVYKLCLFQIISERGQYRTKYYIPSHFSSIDDIETYSNTSFKDDVLKDLIDSLDGLDKIMMEQLLLCSGNKNCLSRKSNIHHNTIQYKFKELANKIKQKWTINEFYT*
Ga0078893_1044842028	F043411	N/A	MKTYIDEMMKRRLTYNGKRVYIKALDSKKALVSYAKEGNVGQFKVNIKDLADFK*
Ga0078893_1044842034	F029278	N/A	MKLTIPTEWEDITIAKYIDLRPVLNSKLNPIERVISILAVLTGEKKEVIRNVSLEQYKDIKEKMRFLETELPKQLEKKRFEIGGKFYEFKTDANKLLFGEYINNMEILQSAKDDEEAVFNNLHHILTTICRPVEKKFLRWKEIEVDGELLRETADNFLHNMPITIAYPIGVFFYNHLGNLTEDIKTSLVEEAERKVKEAEKELASLKDGDGGQP*
Ga0078893_1044842035	F020903	N/A	MADQLDIFGFDASQLEAVKIDKPKNVAEVFNNIAADMVYCLQQSVRKEKLVYQGNLEKSIKMPVKLFGQKMVATLYMAEYYDYVNKGVRGIGGKKKTKDEYWNIKAPDSPYQFKKGPSVSHIRQWAKSKGINEYIARNFIAYEGIRPRHFFDNCMKETFYGEAFNKFKTDIRIVAGEKVTKGLKEIIKK*
Ga0078893_1044842037	F080238	N/A	MDKKETEFDKMLRELAKKEVPERQCSIDDEDCESCGA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078893_10448420

Overview

Ecosystem & Geography

Associated Families

Sequences