NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0078893_11113321

Scaffold Ga0078893_11113321


Overview

Basic Information
Taxon OID3300005837 Open in IMG/M
Scaffold IDGa0078893_11113321 Open in IMG/M
Source Dataset NameExploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4142
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F026889Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0078893_1111332112F023856GGAGGMRCKACNRILEESELTKKDAHGNFLDICGICLSASASAGVDSETMEYYQYEIFTEDENYDTLY*
Ga0078893_1111332113F002858AGGAGMFIDEKSIYVVDGGDYSVYCFGYTQARTVTNDIMRRDPWGGIPFVLRKDLELSLDDRGNVVMSKNTLDKILFLASDDLPEGES*
Ga0078893_1111332114F001655GGAGGMKQPENKHSKHFGNDGPIGNDAEIIVYYEEHGPAEPVLRIPFWYYKEELGMFEHFEASVRRTAKALKESYTYWPEGYIHVQTIINDEYVNII*
Ga0078893_111133215F026889AGGAGMNNVIEEYLALVERTVHTNDIFAYQELEQLEEQYPELADLVYQQAGPLAYDIQNNEVI*
Ga0078893_111133217F008883AGGAGGMTFGRYTIWYNHEEHVWDIYDSRKGFVYPEYTINNYSRLLCGLRDRLGFLDTDKNHRRFWSVMRFIRRFKR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.