Scaffold Ga0008649_10171074

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0008649_10171074

Scaffold Ga0008649_10171074

Overview

Basic Information
Taxon OID	3300005838 Open in IMG/M
Scaffold ID	Ga0008649_10171074 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	857
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062497	Metagenome	130	N
F080488	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0008649_101710741	F062497	GGAG	MIKMKELLSLNEDVEKDIKRNIDELGQLDREIEELQKKLKPLRKQYGELVDNVLPVLENLGKEHYKTRNYIFKIIRKGYERQSFQYKEGFNRALDKVNTNVKRILEQVLDDTKKMVKVSASFQVKPIEIKESSFTDWIKKYTRKVVRKIIP
Ga0008649_101710743	F080488	AGG	MEYKEWYSVGVEQGYLRKYSTRLVDGLASNIKMFQKAFTPSVQDKIGKSTTDTMEKYWHQLYWLMIQRDMMDDSRYWKETDV*

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