Basic Information | |
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Taxon OID | 3300005859 Open in IMG/M |
Scaffold ID | Ga0080003_1004047 Open in IMG/M |
Source Dataset Name | Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5475 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Joseph's Coat, Yellowstone National Park, Washington, USA | |||||||
Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F042426 | Metagenome / Metatranscriptome | 158 | N |
F048414 | Metagenome / Metatranscriptome | 148 | Y |
F063847 | Metagenome / Metatranscriptome | 129 | Y |
F077501 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0080003_100404710 | F077501 | AGGAGG | MDKRFLSLIILFSLLIPLTVNASVFSITFIPENMNQSYTVNIHNQNNTFNSTYQFYGIAEINLTQGVYYIKIISENYNPIIFELNLTENTTLQLYFNSNIIGYGIQNYDYIIFTIMMIMAIFGVLIVMVYYMKGVKVK* |
Ga0080003_10040473 | F042426 | GAGG | MENNVKRLMDLPLKSIYTVGQGETKSGFEVYYLFEYKSGNFSDKADNVYMVYATTILGEWITENFDKLKKTVFELEVEFRDSQYGKKIAVPIRVKKIMDKPKISFNVEESGF* |
Ga0080003_10040475 | F063847 | AGGGGG | MSKFKKYIFCYDQYSYLQDKVITHRVSIYAKDLKEAKDKLNKLGYKDIYVKKRKKVRVE* |
Ga0080003_10040478 | F048414 | AGGAGG | MFSGKLKENASTSLFYSFLLFVFSFVLVIAGLNYIWGRPALIWLPLNIWNLLINLGIFLAVIIIFIIVVRRFI* |
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