NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080006_1237169

Scaffold Ga0080006_1237169


Overview

Basic Information
Taxon OID3300005861 Open in IMG/M
Scaffold IDGa0080006_1237169 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5687
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_C(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026309Metagenome / Metatranscriptome198Y
F073767Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0080006_12371691F073767N/AMVSKGTEDILAAVAVVGALGIGGYVAYRLVSSATTPGCTTPGTPCYSAIQSYVDVLQGCMNEYESTMNTYLEEDNKAGTSLTPAQQANLNYIMNSCVIPQETQLSKALQPYNWQSNMVTVARYVVIGAVVYAVIRASPQIVKGILGALRTAPRTGPEMGSAAMNTTLRVEAPELE
Ga0080006_12371695F026309AGGAGGMSLPAPLNNPNLFIGLVIFVVASILLDLGRIPLSAWTTIVGVLLGYYFGYLHGQYIQRSRGG*

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