Scaffold Ga0080455_1033501

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0080455_1033501

Scaffold Ga0080455_1033501

Overview

Basic Information
Taxon OID	3300005882 Open in IMG/M
Scaffold ID	Ga0080455_1033501 Open in IMG/M
Source Dataset Name	Hydrocarbon microbial community from Halfdan Field MHF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2144
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	Halfdan Field, North Sea, Denmark
Coordinates	Lat. (^o)	55.49	Long. (^o)	7.42	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001607	Metagenome / Metatranscriptome	664	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080455_10335014	F001607	GGA	MPVIAQNVSLAAGATSSNVFDNTNYQFVNEGTEIRVALATTAANDAVSGSNVNYRFTINNTEFADNAILPALVSGQPFGDNGSYRTNAVVATGQSRNRPLLTITNNTSGTIIAKFFVFISQQA*

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