Scaffold Ga0075285_1001346

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075285_1001346

Scaffold Ga0075285_1001346

Overview

Basic Information
Taxon OID	3300005890 Open in IMG/M
Scaffold ID	Ga0075285_1001346 Open in IMG/M
Source Dataset Name	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2527
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location Name	USA: Twitchell Island, California
Coordinates	Lat. (^o)	38.1087	Long. (^o)	-121.653	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000299	Metagenome / Metatranscriptome	1341	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075285_10013463	F000299	GGA	MYTGAFRPIERYDIGHVQEVVRQAHEELRQLLQQRSEIMKRIGTVKQTISGLANLFGESVLNEELMELVDRKTTGRQPGFTKACRMILMESGRAMSSRDICDYFQEKMPALLARHKDPTASVTTVLNRLVEYGEAEAVMVNGRRAWRWVADNPTGSNQRSE

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