Scaffold Ga0075277_1001023

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075277_1001023

Scaffold Ga0075277_1001023

Overview

Basic Information
Taxon OID	3300005895 Open in IMG/M
Scaffold ID	Ga0075277_1001023 Open in IMG/M
Source Dataset Name	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2948
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location Name	USA: Twitchell Island, California
Coordinates	Lat. (^o)	38.1087	Long. (^o)	-121.653	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021749	Metagenome	217	Y
F083977	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075277_10010231	F083977	N/A	MLFSAATACNRGTGGSPTCGIALIASPGLIAAQLQNARAVITDPPRGLPDSLPTLVIQQKNDRGAVIVSRDAEGRVSMQFRGPAFPQRGYGLLVVDDTSQRAMGVLVLDQEDPKDHPAIGTVIGGSTALNLYGVRVDWAS
Ga0075277_10010233	F021749	N/A	VPYTDSIADYSVELPPDTYHWVLAVWKKIGTLTLTPADTALLRVAGYYRSASDSTQPGIVTVTSGPAAGDIDFRVEFDSLRPAIDFVTCTAR*

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