NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070766_10000172

Scaffold Ga0070766_10000172


Overview

Basic Information
Taxon OID3300005921 Open in IMG/M
Scaffold IDGa0070766_10000172 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26083
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006944Metagenome / Metatranscriptome361Y
F018767Metagenome / Metatranscriptome233Y
F022927Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0070766_1000017212F018767GGAGGMQKAHLYEAILLVNRGVDEAVRGLERLRRAKGPQLDSACFDEELVVFEDHRARLNSYLCTALQHSELQDSARFETRYREYEKRALDEVQVYRDVRVLEDRRRVEGKPPKVRFFTQEEQQEWERQCPKPPADVPRSEGEAS*
Ga0070766_1000017213F006944GGAGGMRKKKAAKTQHRDLPKPEKQYPGVHGKIVDWAEHVFEEGMLYVRVRFTDKTELCWSLQTAHVLREADLSDWKTGDYEQLKLYAENEIGWPE*
Ga0070766_1000017227F022927AGGMRIGYSTREAAKKLGVTILTLQRHVKAKTFAAPPLRKVGGVQVRLRRERDVARARKALAGVKRGRKKKG*
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