NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075133_102921

Scaffold Ga0075133_102921


Overview

Basic Information
Taxon OID3300005925 Open in IMG/M
Scaffold IDGa0075133_102921 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome Rauer1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1770
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum lacusprofundi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameRauer Lake, Antarctica
CoordinatesLat. (o)-68.8136Long. (o)77.9341Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100063Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0075133_1029211F100063GAGMSETCEVCGQFTGQTESFDLWIRGLDRRGEGDRIEIDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTPDGELRYVVMIRDEIETDSDTEEVEIDANTVQLHPITGNYLPESIDGYVFGKID*
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