NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066377_10001693

Scaffold Ga0066377_10001693


Overview

Basic Information
Taxon OID3300005934 Open in IMG/M
Scaffold IDGa0066377_10001693 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5133
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002197Metagenome / Metatranscriptome584Y
F004898Metagenome / Metatranscriptome419Y
F046343Metagenome / Metatranscriptome151Y
F061833Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0066377_1000169312F004898GAGGMDLSELIEEFRESEIYETDPQDWMGYLKSDDYWVPDPELVY*
Ga0066377_1000169315F046343N/AMTLAKTGKGTLSEEEMNELIALKEAITYAPHTVSAHKMEKFAELMVRSLEGKESNCPQ*
Ga0066377_1000169317F002197N/AMYTLKLLVPLVVTMCAEGLTTGQGDYCVVDNNKPNVVKYYEPGKSCYVNGTFYRKCEDRLNGSI*
Ga0066377_100016933F061833GGAGMTFETALLHSDYTYDPQAGSYFKEDSIGHLHTYMHIEDDTWNYEKYDENDNVLVSKSFTLD*
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