NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081455_10003588

Scaffold Ga0081455_10003588


Overview

Basic Information
Taxon OID3300005937 Open in IMG/M
Scaffold IDGa0081455_10003588 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17805
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021629Metagenome / Metatranscriptome218Y
F082910Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0081455_1000358810F021629GAGMRENEAAFDLAVASIKSGDIAWGRAILTALRDHIWSTAEPKSTQWMLPRVLQLLEGLATCTPTTPS*
Ga0081455_100035887F082910AGGAGGMTWGEIGQLMSGTGVLMTSLCAGVTVTLVSLHQKRKQWVDDFRALYAEFWNDKEISQVRRWIVSNKLYNEVLKPVLAQRIEKGYNDLDEDGSMKIDMIDKFMSLIIRLETLEESTRTKSQRALIERFLFANHWKDKARSRPELREYIATSWKGEIDMV*
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