Scaffold Ga0066795_10000191

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066795_10000191

Scaffold Ga0066795_10000191

Overview

Basic Information
Taxon OID	3300005938 Open in IMG/M
Scaffold ID	Ga0066795_10000191 Open in IMG/M
Source Dataset Name	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9786
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	68.6137	Long. (^o)	-149.3144	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003910	Metagenome / Metatranscriptome	462	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066795_1000019112	F003910	GAGG	VLGELLHSLSQPLTSLRCSLELSIEEVAEQQQESVSVALQQTEKVIGMIQLMREYLDAERPGPETYSVALAPAVRSVIEELSSIAAVRGIRLRLVGTCTATVPVPESRLRLALQYLITTMIEAQPMGGKVMLLLGEGPAGAVLRVEGERGFREPERSATSPQTKRDPAGATSASVSTLRRVRLAIASRVLETAGASLVFGNGDPPGFVLRIPRRVGAPA*

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