Basic Information | |
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Taxon OID | 3300005941 Open in IMG/M |
Scaffold ID | Ga0070743_10005506 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4532 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F023453 | Metagenome / Metatranscriptome | 210 | Y |
F025145 | Metagenome / Metatranscriptome | 203 | Y |
F099871 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0070743_100055063 | F099871 | N/A | MYGTNEVLFWSITMGHFIKFTFSAFDKDFSVHVDDKDISTPVKMLNEKSRALAKANREFLDKFLDDGIDPFPGWWAESSPTDFYWNVGNNSD* |
Ga0070743_100055067 | F023453 | AGAAG | MRINEIAKPEVIYELEKWAKTQVPLLEGTMSAEKLSKTILQKAMDKFKKQPEPSEEKNEKMEEYMAQLEHMLGSDEKIEKTTLQKFFGFFRAHPRMIGLGVMILMLLSPILPQIAIIGLSLEKILSVTLAGLYAIDIASPAVKTALEM* |
Ga0070743_100055069 | F025145 | N/A | MWYNSFTMNIKHKPQFNIEKVTAHYTKKDGVPVHYVCTSDIDESDKVLDIYYRDTPHPEYNNYYFGLYADEDDRMMICKADSIEKLDFGMISGSKKEWVYSQSHHDYVTTETGFIDGGRKYIRRGGDLETQDHIVCKVLDGEFVTGD* |
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