Basic Information | |
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Taxon OID | 3300005958 Open in IMG/M |
Scaffold ID | Ga0081473_127554 Open in IMG/M |
Source Dataset Name | Hypoxic/sulfidic aquatic microbial communities from Cistern Spring, Yellowstone National Park, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3123 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Deltalipothrixvirus → Acidianus filamentous virus 2 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Yellowstone National Park, Wyoming | |||||||
Coordinates | Lat. (o) | 44.7230812 | Long. (o) | -110.7040247 | Alt. (m) | Depth (m) | 9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F052280 | Metagenome | 143 | Y |
F067919 | Metagenome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0081473_1275542 | F052280 | GAG | MPETQTLIIELKKYGFRFYLENNPEKSWFVKTNEIKPEYFVFIQETNRQMVSILDYKYEDFGVQNILELLIGMILRPTDYFEYLTGEKSDIKEIHIFHF* |
Ga0081473_1275545 | F067919 | GGGGG | LSTRSLSRGKELILINKGDEIEFLIDDIDDGRVWVIKPEYHTKKGIMILEKRNGYIIRLIEKDLRKLGVRNMNELIELIRTRPSETVENLIGEKVKISKVVIKNLNKKS* |
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