Scaffold Ga0081529

Basic Information
Taxon OID	3300005964 Open in IMG/M
Scaffold ID	Ga0081529_117378 Open in IMG/M
Source Dataset Name	Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	8982
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (52.94%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8982

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (52.94%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Echinus Geyser, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7220558	Long. (^o)	-110.7021057	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Echinus Geyser, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.7220558

Long. (^o)

-110.7021057

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F065947	Metagenome	127	Y
F072527	Metagenome / Metatranscriptome	121	N
F084462	Metagenome	112	N
F099550	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081529_11737815	F099550	N/A	MQIVWVPLGILDEIAQIAEKLHLPMNQTIIVLVIHALRKERPTQPNNNTPHFTCPICLQSFTDPHVFLTHLTGDEEVDVKPHI*
Ga0081529_11737816	F065947	GAGG	MLNRTFSLSKIFIGLKRKQNNELPCVAYGTGNLSRRIGRGYFFYDYDTSDEKEVERFRKYVQHNFYVAYVLFRTKHGVMVMTTLTFPYEQLRKYYDQFQANFPSDYLWDIPLFLRISEKWDWQTGKVVSAMPQIIDNPKKIDIYKLIREDMYPKKWYRTSD*
Ga0081529_1173783	F084462	GAGG	MSVPKEKKTVEVLSVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPATNLTAQQIADAVKKDYAKRKGIVGMQVEV*
Ga0081529_1173786	F047176	GAGG	VSAMATRIFRFTISLAAGQANNGASGNPSPFTITAPSGINRRIVEIRPWGTQSFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYSIVITNNGSAAGTFGVDVVVEESALTGGGAAAPAAGGA*
Ga0081529_1173787	F033508	AGG	LAAEAAAAPFVSPTTFRRISGSSTTQLTIPARIGYRHVLYDVFVTGAPAYGYADISVGTRVFIRLPFGAANCVTVDSPSPKVNGKGFLWGLSDLFGAEHLPNAAEDEDINITLNAAVTRIDAYYAEIKPEDVSSHSVPGGSDAKIKPFIEVLDTLVTTTGNGINVLNENMPTGLGLLDVNGRVKATTQFTMLTAFADYVSSGTNFTEYSRLHIYDEDEELFTPLNHEGLFIDYVIGPSDLLMNWRYRWYFKPDQPYVFKPNHQVSVKADVAAVTGTGSTLRVALIGVRERLG*
Ga0081529_1173789	F072527	N/A	MSQQPNRLAELLQQAVLAFGAERVQVLQKIRQYIAQTDCTVLNVQLQQITNINMLRMLQAAGVPQCMQATFYLQINKALKGVKT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0081529_117378

Overview

Ecosystem & Geography

Associated Families

Sequences