NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066369_10095006

Scaffold Ga0066369_10095006


Overview

Basic Information
Taxon OID3300005969 Open in IMG/M
Scaffold IDGa0066369_10095006 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1017
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011620Metagenome / Metatranscriptome289Y
F019388Metagenome / Metatranscriptome230N
F029556Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0066369_100950062F019388AGTAGMQDRFSLIGTVMQTPNEQNPYLVETKNGQILKFSKIDADNEAATKQLDGDDVEVFHDGKLQYRLHGIEQGKLF*
Ga0066369_100950063F011620GGAMFDKILQAVLKFFGKEKPESPTEENNESLEALEKVEALDKIGESS*
Ga0066369_100950064F029556GGAGMSMMKFDGSKIKEIRKRKEQGLPPPPTDGDVVEQSKNAKGGSELIYQRVKERVPDDLWNYFQIILSRVREYEDKPKILWFQDTSKDPEVQFLKDKSYRDKFERFVFPSDWSLEKYNMDLDIEYEKSVV
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