NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0056132_1009844

Scaffold Ga0056132_1009844


Overview

Basic Information
Taxon OID3300005979 Open in IMG/M
Scaffold IDGa0056132_1009844 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius clavatus LIZARD ISLAND.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4504
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000424Metagenome1155Y
F029650Metagenome187N
F063328Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0056132_10098441F029650N/AFMAIGSGVLLPGVAENPTFPILSALAYTTGLGYRPTCDT*
Ga0056132_10098443F000424N/AMRWTCCLCTVGQVVHTLPEGEEVVSVTSIADEVYLLREKERDQVEVYDVINYRLQRSLTVADVSRFTDMTSCEHYRCVFIADSTVSLIHRLDVQGVVAQWAVNDKPTGISVNAAHNVLVTCWVDGKIKEFSSHGEFLRVLTLPDDVINPHHALQTRNGEFIVCHGEPKVSTDDNRVNRVCKISADGCHIIKSHGGQWGSHIGLYDMPFRLAVDNNEFVFVADMNNRRVTLLSPTLVYVRQVVSGDDLKGKPGSLCLDIHRRRLYVADNEHKDRKYTGRVVVFSV*
Ga0056132_10098444F063328GAGLRLKFRKLHSKVVNGVNPASIIDFLFQEAVIGADDMRALLRFRDDPQKQCSELLALLHTSENPQAFIQLYLAIKEEPQFRWLIERIDNFTDQSATDLLQQQQQEQERYISEPAGECVCWKQLFGFRTVFFCAG*
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