NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081538_10002814

Scaffold Ga0081538_10002814


Overview

Basic Information
Taxon OID3300005981 Open in IMG/M
Scaffold IDGa0081538_10002814 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16648
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005102Metagenome / Metatranscriptome412Y
F023704Metagenome / Metatranscriptome209Y
F029550Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0081538_1000281410F005102GGAMADQPHGRYYAQALEVDQNANVMEQIQNALNEGDHHDWHLVGVSDVMAEQGVILFWDTERPSFGISHRQ*
Ga0081538_100028146F029550AGGAGGMADRETKERKLIALMVNDLGPGFGKKEMANLQEEVSALSDPKLDETLAGRLDLPHSADEVALEQALSHVEERFGGDQETFTGAPDMSHDPRPEEREG*
Ga0081538_100028148F023704N/AMEDVERRIEEERARVEAEYRQVLQSSVLFERRIRDRWREKCLAKNRRIAELEKRVLELERSLGERGDL*
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