NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081540_1094844

Scaffold Ga0081540_1094844


Overview

Basic Information
Taxon OID3300005983 Open in IMG/M
Scaffold IDGa0081540_1094844 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024211Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0081540_10948441F024211N/AVAGDRPRDFQDAVTETRTAALGFRVKSGWATVALLTRTPRSLQLLDIDSIELCDPRFPETRQPYHAAMGKLEMDSIKLNQREHTVRSISRQSLTKLLKRYQENRFRINRAALVVGSQIDPATIANPHIRAHALEGRLFRLAVVDALETYEIRAEVFLERDAYACVAARLKRSSDDLKRTIQDLGRSASAKNAPWRAEQKLAALAALFALS*
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