NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0056126_10426582

Scaffold Ga0056126_10426582


Overview

Basic Information
Taxon OID3300005984 Open in IMG/M
Scaffold IDGa0056126_10426582 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus manae LIZARD ISLAND
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)517
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080694Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0056126_104265821F080694N/ASMPLDDIREARSLNDNLLFPSENEKPPLDNDPDCPEETPVVFGRWASVVPMDNTTFCQFGDVTGQPHAFRLPPASQARERYAQAMAFLDQQADSQAKRHKLDSQVAIQSATCVQGCSIDAVLDVRPLNNKCPRIAESQLTSVVGANNTDGTNTHCADSSSCADSVDRHVPMV
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