NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081539_10000002

Scaffold Ga0081539_10000002


Overview

Basic Information
Taxon OID3300005985 Open in IMG/M
Scaffold IDGa0081539_10000002 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)601032
Total Scaffold Genes666 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)455 (68.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035715Metagenome171Y
F060806Metagenome / Metatranscriptome132Y
F063992Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0081539_1000000235F063992N/AMRGLWGIVAAIVFVLVGAGVLIGFASRPPAHVWTFQYQVAGTEEWREWRMYHNHNECEQARRFMKNLEDGQKRRLVSTRHCAERENPALRETPGPPRRR*
Ga0081539_10000002479F060806AGGAGGVLLSRCAWHPRYHGYPLVEGVASWSGWGVKFTDGICADCTARFRDEHRAFLERRRRESAREIESQRQVA*
Ga0081539_10000002493F035715N/AMRSRLQASTARLYFPLARLALCADCEVCFEIGFDACPACGGRTWSPLARMVGHASDGAVVRAVRAVVAEMRSSRANEADAHHLVIVSREQPKLFETLRRELAGNETVTVVLDRRGNRPQPALARMNLRWRNVDRQIAALGWAIVRSDLSTSKR*
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