NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0056123_1005338

Scaffold Ga0056123_1005338


Overview

Basic Information
Taxon OID3300006000 Open in IMG/M
Scaffold IDGa0056123_1005338 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 3 HERON ISLAND
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4121
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015059Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0056123_10053383F015059N/AVTSLGEEIYLLRKKDVDQVEVYDVISCRLLRCLSVPNARSFTDMTSCKHLLCLYIADLGVECVHRLDLQGNSTQWPVNDEPHGLSVNADHNIIVTCRSVRKIKEFSSRGDLLRDVTLAAEVNNPWHVIQLTNGQFIVCHGDHDDPMNRVCKVSEDGGHIIKSHGGPIGSNIGQYSVPCHLAVDDNEFVFVVDINNGRVTLLSPTLDYECQVVSHDQLKWRPLRLCLDVQRRRLYVAESEFKDGVLTAGRVVVFTV*
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